Row 3418

Row ID: 3418 | Dataset Entry | Axioma AXP Content Repository

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This page contains data entry 3418 from the Axioma AXP content repository. The structured data below represents the complete record for this entry.

Hey all,

I have recently switched over to wastewater work and am trying to write a script that will appropriately categorize SARS-CoV-2 variants from Freyja to match the CDC NowCast.

I thought I remembered a table on the NowCast page from earlier in the pandemic that showed how each sub lineage fell into each category, but I can’t find it now. I am confused why the NowCast shows “JN.1” separately from “JN.1.13” and “JN.1.18”, while I’m assuming the JN.1 category contains sub lineages like JN.1.20.

I’m relatively new to genomic work, anyone have any resources or guides to help me make sense of categorization?

FieldValue
text Hey all, I have recently switched over to wastewater work and am trying to write a script that will appropriately categorize SARS-CoV-2 variants from Freyja to match the CDC NowCast. I thought I remembered a table on the NowCast page from earlier in the pandemic that showed how each sub lineage fell into each category, but I can’t find it now. I am confused why the NowCast shows “JN.1” separately from “JN.1.13” and “JN.1.18”, while I’m assuming the JN.1 category contains sub lineages like JN.1…
label r/epidemiology
dataType post
communityName r/epidemiology
datetime 2024-03-05
username_encoded Z0FBQUFBQm5Lakwxd1FiVjI0WU9uc01pMERJYy1JNVBzaFV4ZWZuVTRXcVhWS042SE91TGFyT3VTYlp0dU5ZejhOUGdTaml5NmpCcXVud2F5QzJxMWZlWFVWak5HVnZsR1E9PQ==
url_encoded Z0FBQUFBQm5Lak9FMmRCVmc0U3BjdUlVbVhUNWR0eTNnRkNaaXo0YnE1cWVmb1MzaU4yUE9oNlk4NzVqT1FEblRVbVRoVDhldE1fTFk4Xy1fMUJxb1lEV09YZS1ST3NadDRsQjlURjc4dkFxRFhqTy16QTVJRWp5V0NVUzU3TEE4dUdacDRVMXBzS1lnM004cW1iN01DMEt2bGRudTNObGt2R1RiZG1UdWdzMFBFaVNYbHd0SHJNdmNqV2Z4X0MwUU1lR2oyUlNEWFBL

Raw Record

{
  "text": "Hey all,\n\nI have recently switched over to wastewater work and am trying to write a script that will appropriately categorize SARS-CoV-2 variants from Freyja to match the CDC NowCast.\n\nI thought I remembered a table on the NowCast page from earlier in the pandemic that showed how each sub lineage fell into each category, but I can’t find it now. I am confused why the NowCast shows “JN.1” separately from “JN.1.13” and “JN.1.18”, while I’m assuming the JN.1 category contains sub lineages like JN.1.20.\n\nI’m relatively new to genomic work, anyone have any resources or guides to help me make sense of categorization?",
  "label": "r/epidemiology",
  "dataType": "post",
  "communityName": "r/epidemiology",
  "datetime": "2024-03-05",
  "username_encoded": "Z0FBQUFBQm5Lakwxd1FiVjI0WU9uc01pMERJYy1JNVBzaFV4ZWZuVTRXcVhWS042SE91TGFyT3VTYlp0dU5ZejhOUGdTaml5NmpCcXVud2F5QzJxMWZlWFVWak5HVnZsR1E9PQ==",
  "url_encoded": "Z0FBQUFBQm5Lak9FMmRCVmc0U3BjdUlVbVhUNWR0eTNnRkNaaXo0YnE1cWVmb1MzaU4yUE9oNlk4NzVqT1FEblRVbVRoVDhldE1fTFk4Xy1fMUJxb1lEV09YZS1ST3NadDRsQjlURjc4dkFxRFhqTy16QTVJRWp5V0NVUzU3TEE4dUdacDRVMXBzS1lnM004cW1iN01DMEt2bGRudTNObGt2R1RiZG1UdWdzMFBFaVNYbHd0SHJNdmNqV2Z4X0MwUU1lR2oyUlNEWFBL"
}
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